chr5:1260624:G>A Detail (hg19) (TERT)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr5:1,260,624-1,260,624 |
| hg38 | chr5:1,260,509-1,260,509 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_001193376.1:c.2935C>T | NP_001180305.1:p.Arg979Trp |
| NM_198253.2:c.2935C>T | NP_937983.2:p.Arg979Trp | |
| Ensemble | ENST00000310581.10:c.2935C>T | ENST00000310581.10:p.Arg979Trp |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
ClinVar
| Clinical Significance |
Uncertain significance
|
| Review star |  |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
not provided
|
no assertion provided | Dyskeratosis congenita, autosomal dominant 1 |
unknown
|
Detail | |
|
not provided
|
no assertion provided | aplastic anemia |
somatic
|
Detail | |
| Likely risk allele | 2022-06-09 | no assertion criteria provided |
germline
|
Detail | |
|
Uncertain significance
|
2022-01-18 | criteria provided, single submitter | Idiopathic Pulmonary Fibrosis,Dyskeratosis congenita, autosomal dominant 2 |
germline
|
Detail |
|
Uncertain significance
|
2022-01-18 | criteria provided, single submitter | Idiopathic Pulmonary Fibrosis,Dyskeratosis congenita, autosomal dominant 2 |
germline
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.248 | aplastic anemia | NA | CLINVAR | Detail | |
| 0.241 | DYSKERATOSIS CONGENITA, AUTOSOMAL DOMINANT | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_198253.3(TERT):c.2935C>T (p.Arg979Trp) AND Dyskeratosis congenita, autosomal dominant 1 | ClinVar | Detail |
| NM_198253.3(TERT):c.2935C>T (p.Arg979Trp) AND Aplastic anemia | ClinVar | Detail |
| NM_198253.3(TERT):c.2935C>T (p.Arg979Trp) AND Pulmonary fibrosis | ClinVar | Detail |
| NM_198253.3(TERT):c.2935C>T (p.Arg979Trp) AND multiple conditions | ClinVar | Detail |
| NM_198253.3(TERT):c.2935C>T (p.Arg979Trp) AND multiple conditions | ClinVar | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs199422305 dbSNP
- Genome
- hg19
- Position
- chr5:1,260,624-1,260,624
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
Genome browser